Before the code push, when you installed a custom theme, you could go to Customise Journal > Presentation and there would be an option "Disable Customised Comment Pages" along with a ticky box.
Basically by ticking it, you would disable the custom theme you installed on the main journal so that the comment page would revert back to the site default.
Re: "Disable Custom Replies" ticky box is gone.
Basically by ticking it, you would disable the custom theme you installed on the main journal so that the comment page would revert back to the site default.